NeSI Support Documentation

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NeSI Support Documentation

Getting Started
Getting Started
- Accounts, Projects and Allocations
  Accounts, Projects and Allocations
- Accessing the HPCs
  Accessing the HPCs
- Next Steps
  Next Steps
- Getting Help
  Getting Help
- Cheat Sheets
  Cheat Sheets
- my.nesi.org.nz
  my.nesi.org.nz
General
General
Scientific Computing
Scientific Computing
- Supported Applications
  Supported Applications
  - ABAQUS
  - ANSYS
  - AlphaFold
  - BLAST
  - BRAKER
  - CESM
  - COMSOL
  - Clair3
  - Cylc
  - Delft3D
  - Dorado
  - FDS
  - FlexiBLAS
  - GATK
  - GROMACS
  - Gaussian
  - Java
  - Julia
  - JupyterLab
  - Keras
  - Lambda Stack
  - MAKER
  - MATLAB
  - Miniconda3
  - Molpro
  - NWChem
  - ORCA
  - OpenFOAM
  - OpenSees
  - ParaView
  - Python
  - R
  - RAxML
  - Relion
  - Singularity
  - Supernova
  - Synda
  - TensorFlow on CPUs
  - TensorFlow on GPUs
  - Trinity
  - TurboVNC
  - VASP
  - VTune
  - VirSorter
  - WRF
  - ipyrad
  - ont-guppy-gpu
  - snpEff
- Training
  Training
- Interactive computing using Jupyter
  Interactive computing using Jupyter
- Interactive computing with NeSI OnDemand
  Interactive computing with NeSI OnDemand
  - Interactive apps
    Interactive apps
    
    JupyterLab
    
    JupyterLab
    
    Jupyter kernels - Tool-assisted management
    
    Jupyter kernels - Manual management
    
    RStudio
    
    MATLAB
    
    Code server
    
    Virtual desktop
  - How-to guide
  - Changes from Jupyter on NeSI
  - Release Notes
    
    Release Notes
  - Known Issues
    
    Known Issues
- The NeSI High Performance Computers
  The NeSI High Performance Computers
- Running Jobs on Māui and Mahuika
  Running Jobs on Māui and Mahuika
- Profiling and Debugging
  Profiling and Debugging
- HPC Software Environment
  HPC Software Environment
- Terminal Setup
  Terminal Setup
Storage
Storage
- File Systems and Quotas
  File Systems and Quotas
- Data Recovery
  Data Recovery
  - File Recovery
- Data Transfer Services
  Data Transfer Services
- Nearline long-term storage
  Nearline long-term storage
NeSI Service Subscriptions
NeSI Service Subscriptions
- Overview
  Overview
- Contracts and billing processes
  Contracts and billing processes
  - Billing process
  - Types of contracts
- Service Governance
  Service Governance

Updates

Updates to the cluster, software and documentation.

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December 1, 2024

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